fusobacterium nucleatum subsp nucleatum fnn Search Results


fnn  (ATCC)
97
ATCC fnn
Fnn, supplied by ATCC, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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fnn atcc 23726  (ATCC)
97
ATCC fnn atcc 23726
Fnn Atcc 23726, supplied by ATCC, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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nucleatum subsp nucleatum atcc 23726 fnn  (ATCC)
98
ATCC nucleatum subsp nucleatum atcc 23726 fnn
Nucleatum Subsp Nucleatum Atcc 23726 Fnn, supplied by ATCC, used in various techniques. Bioz Stars score: 98/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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nz cp034842 1  (ATCC)
94
ATCC nz cp034842 1
Nz Cp034842 1, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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fusobacterium nucleatum subsp nucleatum atcc 25586  (ATCC)
97
ATCC fusobacterium nucleatum subsp nucleatum atcc 25586
Sd: S. danieliae , Fnn: F. nucleatum. subsp. nucleatum ATCC 25586, Fna: F. nucleatum. subsp. animalis KCOM 1280, Pg33277: P. gingivalis ATCC 33277, Pg49417: P. gingivalis ATCC 49417, PgP4: P. gingivalis KUMC-P4. ** P <0.005; *** P <0.0005 compared with the autoaggregation of Sd alone by the t -test.
Fusobacterium Nucleatum Subsp Nucleatum Atcc 25586, supplied by ATCC, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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atcc 25286 in fnn  (ATCC)
94
ATCC atcc 25286 in fnn
Sd: S. danieliae , Fnn: F. nucleatum. subsp. nucleatum ATCC 25586, Fna: F. nucleatum. subsp. animalis KCOM 1280, Pg33277: P. gingivalis ATCC 33277, Pg49417: P. gingivalis ATCC 49417, PgP4: P. gingivalis KUMC-P4. ** P <0.005; *** P <0.0005 compared with the autoaggregation of Sd alone by the t -test.
Atcc 25286 In Fnn, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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single layer feed forward artificial neural network  (SoftMax Inc)
90
SoftMax Inc single layer feed forward artificial neural network
Sd: S. danieliae , Fnn: F. nucleatum. subsp. nucleatum ATCC 25586, Fna: F. nucleatum. subsp. animalis KCOM 1280, Pg33277: P. gingivalis ATCC 33277, Pg49417: P. gingivalis ATCC 49417, PgP4: P. gingivalis KUMC-P4. ** P <0.005; *** P <0.0005 compared with the autoaggregation of Sd alone by the t -test.
Single Layer Feed Forward Artificial Neural Network, supplied by SoftMax Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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feed forward artificial neural network (ann) neurosolutions 6  (Neurosolutions)
90
Neurosolutions feed forward artificial neural network (ann) neurosolutions 6
<t>ANN</t> analysis identifies target genes <t>of</t> <t>Wnt</t> signaling during AT2-to-AT1 TD. a Genes identified by ANN analysis depicting the strength of influence. b Gene expression of target genes measured by Affymetrix array. c Gene expression levels of Wnt pathway target genes measured in 3D lung re-aggregate cultures after Wnt ligand treatment ( n = 3). Independent t-test, * p < 0.05. d 3D lung aggregate tissues were treated with Wnt4, Wnt5a and Wnt7a ligands then sectioned and stained with anti-ITGAV antibody (pseudo-green), while nuclei were stained DAPI (blue). Size bar is 50 μm. Representative of three independent biological repeats ( n = 3). e Densitometry of ITGAV staining ( n = 3). Independent t-test, * p < 0.05. f Densitometry of ITGAV staining ( n = 3) of the core and the outer layer of the Wnt5a treated 3D lung tissue aggregate cultures ( n = 3). Mann-Whitney test * p < 0.05, ** p < 0.01, *** p < 0.001
Feed Forward Artificial Neural Network (Ann) Neurosolutions 6, supplied by Neurosolutions, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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artificial neural network  (RStudio)
90
RStudio artificial neural network
<t>ANN</t> analysis identifies target genes <t>of</t> <t>Wnt</t> signaling during AT2-to-AT1 TD. a Genes identified by ANN analysis depicting the strength of influence. b Gene expression of target genes measured by Affymetrix array. c Gene expression levels of Wnt pathway target genes measured in 3D lung re-aggregate cultures after Wnt ligand treatment ( n = 3). Independent t-test, * p < 0.05. d 3D lung aggregate tissues were treated with Wnt4, Wnt5a and Wnt7a ligands then sectioned and stained with anti-ITGAV antibody (pseudo-green), while nuclei were stained DAPI (blue). Size bar is 50 μm. Representative of three independent biological repeats ( n = 3). e Densitometry of ITGAV staining ( n = 3). Independent t-test, * p < 0.05. f Densitometry of ITGAV staining ( n = 3) of the core and the outer layer of the Wnt5a treated 3D lung tissue aggregate cultures ( n = 3). Mann-Whitney test * p < 0.05, ** p < 0.01, *** p < 0.001
Artificial Neural Network, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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tensorflow  (RStudio)
90
RStudio tensorflow
An overall comparison between the three machine learning tools used in the predictions
Tensorflow, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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tensorflow  (KNIME GmbH)
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KNIME GmbH tensorflow
An overall comparison between the three machine learning tools used in the predictions
Tensorflow, supplied by KNIME GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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normalized exponential function (e.g., softmax)  (SoftMax Inc)
90
SoftMax Inc normalized exponential function (e.g., softmax)
An overall comparison between the three machine learning tools used in the predictions
Normalized Exponential Function (E.G., Softmax), supplied by SoftMax Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Sd: S. danieliae , Fnn: F. nucleatum. subsp. nucleatum ATCC 25586, Fna: F. nucleatum. subsp. animalis KCOM 1280, Pg33277: P. gingivalis ATCC 33277, Pg49417: P. gingivalis ATCC 49417, PgP4: P. gingivalis KUMC-P4. ** P <0.005; *** P <0.0005 compared with the autoaggregation of Sd alone by the t -test.

Journal: Journal of Periodontal & Implant Science

Article Title: A murine periodontitis model using coaggregation between human pathogens and a predominant mouse oral commensal bacterium

doi: 10.5051/jpis.2104360218

Figure Lengend Snippet: Sd: S. danieliae , Fnn: F. nucleatum. subsp. nucleatum ATCC 25586, Fna: F. nucleatum. subsp. animalis KCOM 1280, Pg33277: P. gingivalis ATCC 33277, Pg49417: P. gingivalis ATCC 49417, PgP4: P. gingivalis KUMC-P4. ** P <0.005; *** P <0.0005 compared with the autoaggregation of Sd alone by the t -test.

Article Snippet: Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (Fnn; American Type Culture Collection [ATCC], Manassas, VA, USA), F. nucleatum subsp. animalis KCOM 1280 (Fna; Korean Collection for Oral Microorganisms, Gwangju, Korea), P. gingivalis ATCC 33277 (Pg33277; ATCC), P. gingivalis ATCC 49417 (Pg49417; ATCC), and P. gingivalis KUMC-P4 (PgP4) were anaerobically cultured in the appropriate media as previously described [ ].

Techniques:

IMOK: immortalized murine oral keratinocyte, Sd: S. danieliae , Fnn: F. nucleatum. subsp. nucleatum ATCC 25586, Fna: F. nucleatum. subsp. animalis KCOM 1280, Pg33277: P. gingivalis ATCC 33277, Pg49417: P. gingivalis ATCC 49417, PgP4: P. gingivalis KUMC-P4.

Journal: Journal of Periodontal & Implant Science

Article Title: A murine periodontitis model using coaggregation between human pathogens and a predominant mouse oral commensal bacterium

doi: 10.5051/jpis.2104360218

Figure Lengend Snippet: IMOK: immortalized murine oral keratinocyte, Sd: S. danieliae , Fnn: F. nucleatum. subsp. nucleatum ATCC 25586, Fna: F. nucleatum. subsp. animalis KCOM 1280, Pg33277: P. gingivalis ATCC 33277, Pg49417: P. gingivalis ATCC 49417, PgP4: P. gingivalis KUMC-P4.

Article Snippet: Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (Fnn; American Type Culture Collection [ATCC], Manassas, VA, USA), F. nucleatum subsp. animalis KCOM 1280 (Fna; Korean Collection for Oral Microorganisms, Gwangju, Korea), P. gingivalis ATCC 33277 (Pg33277; ATCC), P. gingivalis ATCC 49417 (Pg49417; ATCC), and P. gingivalis KUMC-P4 (PgP4) were anaerobically cultured in the appropriate media as previously described [ ].

Techniques:

Fna: F. nucleatum. subsp. animalis KCOM 1280, Pg33277: P. gingivalis ATCC 33277, PgP4: P. gingivalis KUMC-P4, CEJ: cementoenamel junction, ABC: alveolar bone crest. # P <0.05, ### P <0.0005 compared with week 5 by the t -test. ** P <0.005, *** P <0.0005 compared with the sham group by t -test. ††† P <0.0005 compared with other experimental groups by analysis of variance with Bonferroni-adjusted post hoc tests.

Journal: Journal of Periodontal & Implant Science

Article Title: A murine periodontitis model using coaggregation between human pathogens and a predominant mouse oral commensal bacterium

doi: 10.5051/jpis.2104360218

Figure Lengend Snippet: Fna: F. nucleatum. subsp. animalis KCOM 1280, Pg33277: P. gingivalis ATCC 33277, PgP4: P. gingivalis KUMC-P4, CEJ: cementoenamel junction, ABC: alveolar bone crest. # P <0.05, ### P <0.0005 compared with week 5 by the t -test. ** P <0.005, *** P <0.0005 compared with the sham group by t -test. ††† P <0.0005 compared with other experimental groups by analysis of variance with Bonferroni-adjusted post hoc tests.

Article Snippet: Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (Fnn; American Type Culture Collection [ATCC], Manassas, VA, USA), F. nucleatum subsp. animalis KCOM 1280 (Fna; Korean Collection for Oral Microorganisms, Gwangju, Korea), P. gingivalis ATCC 33277 (Pg33277; ATCC), P. gingivalis ATCC 49417 (Pg49417; ATCC), and P. gingivalis KUMC-P4 (PgP4) were anaerobically cultured in the appropriate media as previously described [ ].

Techniques:

Sd: S. danieliae , Fna: F. nucleatum . subsp. animalis KCOM 1280, Pg33277: P. gingivalis ATCC 33277, PgP4: P. gingivalis KUMC-P4, qPCR: quantitative polymerase chain reaction. # P <0.05, ## P <0.005, ### P <0.005 compared with week 5 by the Mann-Whitney U test. * P <0.05, ** P <0.005, *** P <0.005 compared with the sham group by the Mann-Whitney U test.

Journal: Journal of Periodontal & Implant Science

Article Title: A murine periodontitis model using coaggregation between human pathogens and a predominant mouse oral commensal bacterium

doi: 10.5051/jpis.2104360218

Figure Lengend Snippet: Sd: S. danieliae , Fna: F. nucleatum . subsp. animalis KCOM 1280, Pg33277: P. gingivalis ATCC 33277, PgP4: P. gingivalis KUMC-P4, qPCR: quantitative polymerase chain reaction. # P <0.05, ## P <0.005, ### P <0.005 compared with week 5 by the Mann-Whitney U test. * P <0.05, ** P <0.005, *** P <0.005 compared with the sham group by the Mann-Whitney U test.

Article Snippet: Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (Fnn; American Type Culture Collection [ATCC], Manassas, VA, USA), F. nucleatum subsp. animalis KCOM 1280 (Fna; Korean Collection for Oral Microorganisms, Gwangju, Korea), P. gingivalis ATCC 33277 (Pg33277; ATCC), P. gingivalis ATCC 49417 (Pg49417; ATCC), and P. gingivalis KUMC-P4 (PgP4) were anaerobically cultured in the appropriate media as previously described [ ].

Techniques: Real-time Polymerase Chain Reaction, MANN-WHITNEY

H&E: hematoxylin and eosin, Fna: F. nucleatum . subsp. animalis KCOM 1280, Pg33277: P. gingivalis ATCC 33277, PgP4: P. gingivalis KUMC-P4, Sd: S. danieliae .

Journal: Journal of Periodontal & Implant Science

Article Title: A murine periodontitis model using coaggregation between human pathogens and a predominant mouse oral commensal bacterium

doi: 10.5051/jpis.2104360218

Figure Lengend Snippet: H&E: hematoxylin and eosin, Fna: F. nucleatum . subsp. animalis KCOM 1280, Pg33277: P. gingivalis ATCC 33277, PgP4: P. gingivalis KUMC-P4, Sd: S. danieliae .

Article Snippet: Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (Fnn; American Type Culture Collection [ATCC], Manassas, VA, USA), F. nucleatum subsp. animalis KCOM 1280 (Fna; Korean Collection for Oral Microorganisms, Gwangju, Korea), P. gingivalis ATCC 33277 (Pg33277; ATCC), P. gingivalis ATCC 49417 (Pg49417; ATCC), and P. gingivalis KUMC-P4 (PgP4) were anaerobically cultured in the appropriate media as previously described [ ].

Techniques:

Sd: S. danieliae , sIgA: salivary immunoglobulin A, Fna: F. nucleatum . subsp. animalis KCOM 1280, Pg: P. gingivalis , Pg33277: P. gingivalis ATCC 33277, PgP4: P. gingivalis KUMC-P4, IgA: serum immunoglobulin A, IgG: immunoglobulin G. # P <0.05, ## P <0.005, ### P <0.005 compared with week 5 by Mann-Whitney U test. * P <0.05, ** P <0.005, *** P <0.005 compared with the sham group by the Mann-Whitney U test.

Journal: Journal of Periodontal & Implant Science

Article Title: A murine periodontitis model using coaggregation between human pathogens and a predominant mouse oral commensal bacterium

doi: 10.5051/jpis.2104360218

Figure Lengend Snippet: Sd: S. danieliae , sIgA: salivary immunoglobulin A, Fna: F. nucleatum . subsp. animalis KCOM 1280, Pg: P. gingivalis , Pg33277: P. gingivalis ATCC 33277, PgP4: P. gingivalis KUMC-P4, IgA: serum immunoglobulin A, IgG: immunoglobulin G. # P <0.05, ## P <0.005, ### P <0.005 compared with week 5 by Mann-Whitney U test. * P <0.05, ** P <0.005, *** P <0.005 compared with the sham group by the Mann-Whitney U test.

Article Snippet: Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (Fnn; American Type Culture Collection [ATCC], Manassas, VA, USA), F. nucleatum subsp. animalis KCOM 1280 (Fna; Korean Collection for Oral Microorganisms, Gwangju, Korea), P. gingivalis ATCC 33277 (Pg33277; ATCC), P. gingivalis ATCC 49417 (Pg49417; ATCC), and P. gingivalis KUMC-P4 (PgP4) were anaerobically cultured in the appropriate media as previously described [ ].

Techniques: MANN-WHITNEY

ANN analysis identifies target genes of Wnt signaling during AT2-to-AT1 TD. a Genes identified by ANN analysis depicting the strength of influence. b Gene expression of target genes measured by Affymetrix array. c Gene expression levels of Wnt pathway target genes measured in 3D lung re-aggregate cultures after Wnt ligand treatment ( n = 3). Independent t-test, * p < 0.05. d 3D lung aggregate tissues were treated with Wnt4, Wnt5a and Wnt7a ligands then sectioned and stained with anti-ITGAV antibody (pseudo-green), while nuclei were stained DAPI (blue). Size bar is 50 μm. Representative of three independent biological repeats ( n = 3). e Densitometry of ITGAV staining ( n = 3). Independent t-test, * p < 0.05. f Densitometry of ITGAV staining ( n = 3) of the core and the outer layer of the Wnt5a treated 3D lung tissue aggregate cultures ( n = 3). Mann-Whitney test * p < 0.05, ** p < 0.01, *** p < 0.001

Journal: Respiratory Research

Article Title: Wnt signaling regulates trans-differentiation of stem cell like type 2 alveolar epithelial cells to type 1 epithelial cells

doi: 10.1186/s12931-019-1176-x

Figure Lengend Snippet: ANN analysis identifies target genes of Wnt signaling during AT2-to-AT1 TD. a Genes identified by ANN analysis depicting the strength of influence. b Gene expression of target genes measured by Affymetrix array. c Gene expression levels of Wnt pathway target genes measured in 3D lung re-aggregate cultures after Wnt ligand treatment ( n = 3). Independent t-test, * p < 0.05. d 3D lung aggregate tissues were treated with Wnt4, Wnt5a and Wnt7a ligands then sectioned and stained with anti-ITGAV antibody (pseudo-green), while nuclei were stained DAPI (blue). Size bar is 50 μm. Representative of three independent biological repeats ( n = 3). e Densitometry of ITGAV staining ( n = 3). Independent t-test, * p < 0.05. f Densitometry of ITGAV staining ( n = 3) of the core and the outer layer of the Wnt5a treated 3D lung tissue aggregate cultures ( n = 3). Mann-Whitney test * p < 0.05, ** p < 0.01, *** p < 0.001

Article Snippet: Evaluation of Wnt signaling pathway on AT2-to-AT1 TD was carried out using a feed forward artificial neural network (ANN) (Neurosolutions 6, NeuroDimension Inc.) software.

Techniques: Gene Expression, Staining, MANN-WHITNEY

An overall comparison between the three machine learning tools used in the predictions

Journal: Journal of Cheminformatics

Article Title: Off-targetP ML: an open source machine learning framework for off-target panel safety assessment of small molecules

doi: 10.1186/s13321-022-00603-w

Figure Lengend Snippet: An overall comparison between the three machine learning tools used in the predictions

Article Snippet: A feed forward neural network was employed using Tensorflow [ ] (version 2.3) and Keras [ ] packages (version 2.3) in R studio (version 1.1.456) using R (version 3.5.1).

Techniques: Comparison